Publications

Journal Articles

In press

• Besbeas, P. (in press) Estimation. Encyclopedia of Research Design. Sage Publications (Ed Salkind, N.J.)

• Bird, S.M., Hay, G., Hutchinson, S. and King, R. (in press) Commentary: Missing targets on drugs-related deaths, and a Scottish paradox. International Journal of Drug Policy
  

• Bonner, S.J., Morgan, B.J.T. and King, R. (in press) Continuous covariates in mark-recapture-recovery analysis: A comparison of methods. Biometrics

• Borchers, D.L., Marques, T.A., Gunnlaugsson, Th. and Jupp, P. (in press) Estimating distance sampling detection functions when distances are measured with errors. JABES

• Buckland, S.T., Laake, J.L. and Borchers, D.L. (in press) Double-observer line transect methods: levels of independence. Biometrics

• Buckland, S.T., Plumptre, A.J., Thomas, L. and Rexstad, E.A. (in press) Line transect sampling of primates: can animal-to-observer distance methods work? International Journal of Primatology

• Buckland, S.T., Plumptre, A.J., Thomas, L. and Rexstad, E.A. (in press) Design and analysis of line transect surveys for primates. International Journal of Primatology
  

• Cave, V.M., King, R. and Freeman, S.N. (in press) An integrated population model from constant effort bird-ringing data. JABES

• Cole, D.J. (in press) Determining parameter redundancy of multi-state mark-recapture models for sea birds. Presented at Euring 2009. Proceedings in Journal of Ornithology
  

• Cole, D. and Morgan, B.J.T. (in press) A note on determining parameter redundancy in age-dependent tag return models for estimating fishing mortality, natural mortality and selectivity. JABES

• Griffiths, R.A., Sewell, D. and McCrea, R.S. (in press) Dynamics of a declining amphibian metapopulation: survival, dispersal and the impact of climate. Biological Conservation

• Heide-Jørgensen, M.P., Laidre, K.L., Borchers, D.L., Stem, H. and Simon, M.J. (in press) The effect of sea ice loss on beluga whales (Delphinapterus leucas) in West Greenland. Polar Research

• Heide-Jørgensen, M.P., Laidre, K.L., Simon, M., Rasmussen, M., Burt, M.L. and Borchers, D.L. (in press) Abundance estimates of fin whales in West Greenland in 2007. JCRM

• Illian, J.B. and Hendrichsen, D.K., (in press) Gibbs point process models with fixed and random effects. Environmetrics
  

• Johnson, L.R. (in press) Implications of dispersal and life history strategies for the persistence of linyphiid spider populations. Ecological Modelling

• Katara, I., Illian, J.B., Pierce, G.J., Scott, B. and Wang, J. (in press) Oceanic patterns in the Mediterranean: Are they influenced by teleconnection patterns? International Journal of Climatology

• Marçalo, A., Marques, T.A., Araújo, J., Pousão-Ferreira, P, Erzini, K. and Stratoudakis, Y. (in press) Fishing simulation experiments for predicting effects of purse seine capture on sardines (Sardina pilchardus). ICES Journal of Marine Sciences

• Marques, T.A., Buckland, S.T., Borchers, D.L., Tosh, D. and McDonald, R.A. (in press) Point transect sampling along linear features. Biometrics

• Marques, T.A., Buckland, S.T., Borchers, D.L., Rexstad, E. and Thomas, L. (in press) Distance sampling. Springer's International Lexicon of Statistical Sciences
  

• Mazzetta, C. (in press) Age-specificity in conditional ring-recovery models. JABES

• McClintock, B.T., Bailey, L.L., Pollock, K.H. and Simons, T.R. (in press) Unmodeled observation error induces bias when inferring patterns and dynamics of species occurrence based on auditory detections. Ecology

• McClintock, B.T. and Hoeting, J.A. (in press) Bayesian analysis of abundance for binomial
  sighting data with unknown number of marked individuals. Environmental and Ecological Statistics
  

• Paxton, C.G.M., Hedley, S. and Bannister, J.L. (in press) Group IV Humpback whales: their status from aerial and land-based surveys off Western Australia, 2005. JCRM
  

• Russell, R.E., Lehmkuhl, J.F., Buckland, S.T. and Saab, V.A. (in press) Short-term responses of red squirrels to prescribed burning in the interior Pacific Northwest, USA. Journal of Wildlife Management

• Smout, S., King, R. and Pomeroy, P. (in press) Estimating demographic parameters for capture-recapture data in the presence of multiple mark types. Environmental and Ecological Statistics

• Summers, R.W. and Buckland, S.T. (in press) A first survey of the global population size and distribution of the Scottish crossbill Loxia scotica. Bird Conservation International

• Thomas, L., Buckland, S.T., Rexstad, E.A., Laake, J.L., Strindberg, S., Hedley, S.L., Bishop, J.R.B., Marques, T.A. and Burnham, K.P. (in press) Distance software: design and analysis of distance sampling surveys for estimating population size. J. App. Ecol.

• Viana, M., Pierce, G.J., Illian, J.B., MacLeod, C.D., Bailey, N., Wang, J. and Hastie, L.C. (in press) Seasonal movements of veined squid Loligo forbesi in Scottish (UK) waters. Aquatic Living Resources
  

• Walker, C.G., Mackenzie, M.L., Donovan, C.R. and O'Sullivan, M.J. (in press) SALSA: A Spatially Adaptive Local Smoothing Algorithm. Journal of Statistical Computation and Simulation
  

2010

• Gramacy, R.B., Samworth, R.J. and King, R. (2010) Importance tempering. Statistics and Computing 20 1-7

2009

• Aars, J., Marques, T.A., Buckland, S.T., Anderson, M., Belikov, S., Boltunov, A. and Wiig, Ø. (2009) Estimating the Barents Sea polar bear subpopulation size. Marine Mammal Science 25 35-52

• Baillie, S.R., Brooks, S.P., King, R. and Thomas, L. (2009) Using a state-space model of the UK song thrush Turdus Philomelos population to diagnose the causes of a population decline. Modeling Demographic Processes in Marked Populations. Springer Series: Environmental and Ecological Statistics 3 543-564 (Eds. Thomson, D.L., Cooch, E.G. and Conroy, M.J.)

• Besbeas, P., Borysiewicz, R. and Morgan, B.J.T. (2009) Completing the ecological jigsaw. Modelling Demographic Processes in Marked Populations. Springer Series: Environmental and Ecological Statistics 3 513-539 (Eds. Thomson, D.L., Cooch, E.G. and Conroy, M.J.)

• Borysiewicz, R.S., Morgan, B.J.T., Gimenez, O., Henaux, V., Begnballe, T. and Lebreton, J.-D. (2009) An integrated analysis of multisite recruitment, mark-recapture-recovery and multisite census data. Modelling Demographic Processes in Marked Populations. Springer Series: Environmental and Ecological Statistics 3 579-591 (Eds. Thomson, D.L., Cooch, E.G. and Conroy, M.J.)

• Buckland, S.T., Russell, R.E., Dickson, B.G., Saab, V.A., Gorman, D.N. and Block, W.M. (2009) Analysing designed experiments in distance sampling. JABES 14 432-442

• Borchers, D.L., Pike, D., Gunnlaugsson, Th. and Vikingson, G. (2009) Minke whale abundance estimation from the NASS 1987 and 2001 cue counting surveys taking account of distance estimation errors. NAMMCO Scientific Publications, Volume 7: North Atlantic Sightings Surveys (1987-2001) 95-110

• Byrne, L.J., Cole, D.J., Cox, B.S., Ridout, M.S., Morgan, B.J.T. and Tuite, M.F. (2009) The Number and Transmission of [PSI+] Prion Seeds (Propagons) in the Yeast Saccharomyces Cerevisiae. PLoS ONE eISSN-1932-6203
  

• Cañadas, A., Donovan, G., Desportes, G. and Borchers, D.L. (2009) A short review of the distribution of short-beaked common dolphins (Delphinus delphis) in the central and eastern North Atlantic with an abundance estimate for part of this area. NAMMCO Scientific Publications, Volume 7: North Atlantic Sightings Surveys (1987-2001) 201-220

• Cave, V.M., Freeman, S.N., Brooks, S.P., King, R. and Balmer, D.E. (2009) On adjusting for missed visits in the indexing of abundance from `constant effort' ringing. Modeling Demographic Processes in Marked Populations. Springer Series: Environmental and Ecological Statistics 3 951-966 (Eds. Thomson, D.L., Cooch, E.G. and Conroy, M.J.)

• Efford, M.G., Borchers, D.L. and Byrom, A.E. (2009) Density estimation by spatially explicit capture-recapture: likelihood-based methods. Modeling Demographic Processes in Marked Populations. Springer Series: Environmental and Ecological Statistics 3 255-269 (Eds. Thomson, D.L., Cooch, E.G. and Conroy, M.J.)

• Efford, M.G., Dawson, D. and Borchers, D.L. (2009) Population density estimated from locations of individuals on a passive detector array. Ecology 90 2676-2682

• Fewster, R.M., Buckland, S.T., Burnham, K.P., Borchers, D.L., Jupp, P.E., Laake, J.L. and Thomas, L. (2009) Estimating the encounter rate variance in distance sampling. Biometrics 65 225-236

• Gimenez, O., Bonner, S., King, R., Parker, R.A., Brooks, S.P., Jamieson, L.E., Grosbois, V., Morgan, B.J.T. and Thomas, L. (2009) WinBUGS for population ecologists: Bayesian modelling using Markov chain Monte Carlo (MCMC) methods. Modelling Demographic Processes in Marked Populations. Springer Series: Environmental and Ecological Statistics 3 885-918 (Eds. Thomson, D.L., Cooch, E.G. and Conroy, M.J.)

• Gimenez, O., Morgan, B.J.T. and Brooks, S.P. (2009) Weak identifiability in models for mark-recapture-recovery data. Modelling Demographic Processes in Marked Populations. Springer Series: Environmental and Ecological Statistics 3 1055-1068 (Eds. Thomson, D.L., Cooch, E.G. and Conroy, M.J.)

• Grosbois, V., Harris, M.P., Anker-Nilssen, T., McCleery, R.H., Shaw, D.N., Morgan, B.J.T. and Gimenez, O. (2009) Modeling survival at multi-population scales using mark-recapture
  data. Ecology 90(10) 2922-2932

• Harris, C.M., Park, K.J., Atkinson, R., Edwards, C. and Travis, J.M.J. (2009) Invasive species control: incorporating demographic data and seed dispersal into a management model for Rhododendron ponticum. Ecological Informatics 4 226-233

• Illian, J.B., Prosser, J.I., Baker, K.L. and Rangel-Castro, J.I. (2009) Functional principal component data analysis: a new method for analysing microbial community fingerprints. Journal of Microbiological Methods 79 89-95

• Illian, J.B., Waagepetersen, R.P. and Møller, J. (2009) Hierarchical spatial point process analysis for a plant community with high biodiversity. Journal of Environmental and Ecological Statistics 16 389-405
  

• King, R., Bird, S.M., Hay, G. and Hutchinson, S. (2009) Estimating current injectors in Scotland and their drug-related death rate by sex, region and age-group via Bayesian capture-recapture methods. Statistical Methods in Medical Research 18 341-359

• Law, R., Illian, J.B., Burslem, D.F.R.P., Gratzer, G., Gunatilleke, C.V.S. and Gunatilleke, I.A.U.N. (2009) Ecological information from spatial patterns of plants: insights from point process theory. Journal of Ecology 97 616-628
  

• Marques, T.A. (2009) Distance sampling: estimating animal density. Significance 6 136-137

• Marques, T.A., Thomas, L., Ward, J., DiMarzio, N. and Tyack, P.L. (2009) Estimating cetacean population density using fixed passive acoustic sensors: an example with Blainville's beaked whales. The Journal of the Acoustical Society of America 125 1982-1994

• McClintock, B.T. and White, G.C. (2009) A less field-intensive robust design for estimating demographic parameters with mark-resight data. Ecology 90 313-320

• McClintock, B.T., White, G.C. Antolin, M.F. and Tripp, D.W. (2009) Estimating abundance using mark-resight when sampling is with replacement or the number of marked individuals is unknown. Biometrics 65 237-246

• McClintock, B.T., White, G.C., Burnham, K.P. and Pryde, M.A. (2009) A generalized mixed effects model of abundance for mark-resight data when sampling is without replacement. Modeling Demographic Processes in Marked Populations. Springer Series: Environmental and Ecological Statistics 3 271-289 (Eds. Thomson, D.L., Cooch, E.G. and Conroy, M.J.)

• Merl, D., Johnson, L.R., Gramacy, R.B. and Mangel, M.S. (2009) A statistical framework for the adaptive management of epidemiological interventions. PLoS ONE 4(6) e5087
  

• Morgan, B.J.T. and Ridout, M.S. (2009) Estimating N: a robust approach to recapture heterogeneity. Modelling Demographic Processes in Marked Populations. Springer Series: Environmental and Ecological Statistics 3 1069-1080 (Eds. Thomson, D.L., Cooch, E.G. and Conroy, M.J.)

• Moyes, K., Morgan, B.J.T., Morris, A., Morris, S.J., Clutton-Brock, T.H. and Coulson, T. (2009) Exploring individual quality in a wild population of red deer. J. Anim. Ecol. 78 406-413

• New, L.F., Matthiopoulos, J., Redpath, S. and Buckland, S.T. (2009) Fitting models of multiple hypotheses to partial population data: investigating the causes of cycles in red grouse. American Naturalist 174 399-412
  

• Newman, K.B., Fernández, C., Thomas, L. and Buckland, S.T. (2009) Monte Carlo inference for state-space models of wild animal populations. Biometrics 65 572-583

• Nichols, J.D., Thomas, L. and Conn, P.B. (2009) Inferences about landbird abundance from count data: recent advances and future directions. Modeling Demographic Processes in Marked Populations. Springer Series: Environmental and Ecological Statistics 3 203-238 (Eds. Thomson, D.L., Cooch, E.G. and Conroy, M.J.)

• Paxton, C.G.M. (2009) The plural of 'anecdote' can be 'data': statistical analysis of viewing distances in reports of unidentified giant marine animals 1758 - 2000. Journal of Zoology 279 381-387

• Paxton, C.G.M., Burt, M.L., Hedley, S., Víkingsson, G.A., Gunnlaugsson, Th. and Desportes, G. (2009) Density surface fitting to estimate the abundance of humpback whales based on the NASS-95 and NASS-2001 aerial and shipboard surveys. NAMMCO Scientific Publications 7 143-160

• Paxton, C.G.M., Winfield, I.J., Fletcher, J.M., George, D. G. and Hewitt, D.P. (2009) Investigation of first year biotic and abiotic influences on the recruitment of pike (Esox lucius) in Windermere, U.K. using Generalized Additive Models. Journal of Fish Biology 74 2279-2298

• Pike, D.G., Paxton, C.G.M., Gunnlaugsson, Th. and Víkingsson, G.A. (2009) Trends in the abundance of cetaceans from aerial surveys in Icelandic coastal waters, 1986-2001. NAMMCO Scientific Publications 7 117-142

• Reynolds, T.J., King, R., Harwood, J., Frederiksen, M., Harris, M.P. and Wanless, S. (2009) Integrated data analysis in the presence of emigration and mark loss. JABES 14 411-431

• Ridout, M.S. and Linkie, M. (2009) Estimating overlap of daily activity patterns from camera trap data. JABES 14 322-337

• Sharples, R.J., Mackenzie, M.L. and Hammond, P.S. (2009) Estimating seasonal abundance of a central place forager using counts and telemetry data. Marine Ecology Progress Series 378 289-298
  

• Tavecchia, G., Besbeas, P.T., Coulson, T., Morgan, B.J.T. and Clutton-Brock, T.H. (2009) Estimating population size and hidden demographic parameters with state-space modelling. American Naturalist 173 722-733
  

• Thomson, D.L., Conroy, M.J., Anderson, D.R., Burnham, K.P., Cooch, E.G., Francis, C.M., Lebreton, J.-D., Lindberg, M.S., Morgan, B.J.T., Otis, D.L. and White, G.C. (2009) Standardising terminology and notation for the analysis of demographic processes in marked populations. Modelling Demographic Processes in Marked Populations. Springer Series: Environmental and Ecological Statistics 3 1099-1106 (Eds. Thomson, D.L., Cooch, E.G. and Conroy, M.J.)

• Williams, R. and Thomas, L. (2009) Cost-effective abundance estimation of rare marine animals: small-boat surveys for killer whales in British Columbia Canada. Biological Conservation 142 1542-1547.
  

2008

• Aarts, G., Mackenzie, M.L., McConnell, B.J., Fedak, M.A. and Matthiopoulos, J. (2008) Estimating space use and environmental preference from wildlife telemetry data. Ecography 31 140-160

• Besbeas, P. and Morgan, B.J.T. (2008) Improved estimation of the stable laws. Statistics and Computing 18 (2) 219-231
  

• Bernal, M., Ibaibarriaga, L., Lago de Lanzos, A., Lonergan, M.E., Hernandez, C. Franco, C. Rasines, I., Valdes, L. and Borchers, D.L. (2008) Using multinomial models to analyse data from sardine incubation experiments; a comparison with traditional techniques. Ices Journal of Marine Science 65 51-59

• Borchers, D.L. and Efford, M. (2008) Spatially explicit maximum likelihood methods for capture-recapture studies. Biometrics 64 377-385

• Brooks, S.P., Freeman, S.N., Greenwood, J.J.D., King, R. and Mazzetta, C. (2008) Quantifying conservation concern - Bayesian statistics and the red data lists. Biological Conservation 141 1436-1441

• Buckland, S.T., Marsden, S.J. and Green, R.E (2008) Estimating bird abundance: making methods work. Bird Conservation International 18 S91-S108

• Catchpole, E.A., Morgan, B.J.T. and Tavecchia, G.J. (2008) A new method for analysing discrete life history data with missing covariate values. Roy. Statist. Soc. B 70 445-460

• Fewster, R.M., Southwell, C., Borchers, D.L., Buckland, S.T. and Pople, A.R. (2008) The influence of animal mobility on the assumption of uniform distances in aerial line transect surveys. Wildlife Research 35 275-288

• Freeman, S.N. and Newson, S.E. (2008) On a log-linear approach to detecting ecological interactions in monitored populations. Ibis 150(2) 250-258

• Harris, C.M., Calladine, J., Wernham, C.W. and Park, K.J. (2008) Impacts of piscivorous birds on salmonid populations and game fisheries in Scotland: a review. Wildlife Biology 14(4) 395-411

• Heide-Jørgensen, M.P., Borchers, D.L., Witting, L., Simon, M.J., Laidre, K.L., Rosing-Asvid, A. and Pike, D.G. (2008) Estimates of large whale abundance in West Greenland waters from an aerial survey in 2005. JCRM 10 119-129

• Johnson, L.R. (2008) Microcolony and biofilm formation as a survival strategy for bacteria. Journal of Theoretical Biology 251 24-34

• Katara, I., Illian, J.B., Pierce, G.J., Scott, B. and Wang, J. (2008) Atmospheric forcing on chlorophyll concentration in the Mediterranean. Hydrobiologia 612(1) 33-48

• King, R. and Brooks, S.P. (2008) On the Bayesian estimation of a closed population size in the presence of heterogeneity and model uncertainty. Biometrics 64 816-824

• King, R., Brooks, S.P. and Coulson, T. (2008) Analysing complex capture-recapture data: incorporating time-varying covariate information. Biometrics 64 1187-1195

• King, R., Brooks, S.P., Mazzetta, C., Freeman, S.N. and Morgan, B.J.T. (2008) Identifying and diagnosing population declines: a Bayesian assessment of lapwings in the UK. Applied Statistics 57 (5) 609-632

• Morgan, B.J.T. and Ridout, M.S. (2008) A new mixture model for capture heterogeneity. Applied Statistics 57 (4) 433-446

• Palmer, K.J., Ridout, M.S. and Morgan, B.J.T. (2008) Modelling cell generation times by using the tempered stable distribution. Journal of the Royal Statistical Society: Series C (Applied Statistics) 57(4) 379-397

• Panigada, S., Zanardelli, M., Mackenzie, M.L., Donovan, C.R., Mélin, F. and Hammond, P.S. (2008) Modelling habitat preferences for fin whales and striped dolphins in the Pelagos Sanctuary (Western Mediterranean Sea) with physiographic and remote sensing variables. Remote Sensing of Environment 112 3400-3412

• Patterson, T.A., Thomas, L.J., Wilcox, C., Ovaskainen, O. and Matthiopoulos, J. (2008) State-space models of individual animal movement. Trends in Ecology and Evolution 23(2) 87-94

• Southwell, C., Paxton, C.G.M. and Borchers, D.L. (2008) Detectability of penguins in aerial surveys over the pack-ice off Antarctica. Wildlife Research 35 349-357

• Southwell, C., Paxton, C.G.M., Borchers, D.L., Boveng, P. and de la Mare, W. (2008) Taking account of dependent species in management of the Southern Ocean krill fishery: estimating crabeater seal abundance off east Antarctica. Journal of Applied Ecology 45 622-631
  

• Southwell, C., Paxton, C.G.M., Borchers, D.L., Boveng, P., Rogers, T., de la Mare, W.K. (2008) Uncommon or cryptic? Challenges in estimating leopard seal abundance by conventional but state-or-the-art methods. Deep-Sea Research 55 519-531

2007

• Buckland, S.T., Borchers, D.L., Johnston, A., Henrys, P.A. and Marques, T.A. (2007) Line transect methods for plant surveys. Biometrics 63 989-998

• Buckland, S.T., Newman, K.B., Fernández, C., Thomas, L. and Harwood, J. (2007) Embedding population dynamics models in inference. Statistical Science 22 44-58

• Byrne, L.J., Cox, B.S., Cole, D.J., Ridout, M.S., Morgan, B.J.T. and Tuite, M.F. (2007) Cell division is essential for elimination of the yeast [PSI+] prion by guanidine hydrochloride. Proceedings of the National Academy of Sciences of the United States of America 104(28) 11688-11693

• Cole, D.J., Ridout, M.S., Morgan, B.J.T., Byrne, L.J. and Tuite, M.F. (2007) Approximations for expected generation number. Biometrics 63(4) 1023-1030

• Freeman, S.N., Noble, D.G., Newson, S.E. and Baillie, S.R. (2007) Modelling population changes using data from different surveys: the Common Birds Census and the Breeding Bird Survey. Bird Study 54(1) 61-72

• Freeman, S.N., Robinson, R.A., Clark, J.A., Griffin, B.M. and Adams, S.Y. (2007) Changing demography and population decline in the Common Starling Sturnus vulgaris: A multisite approach to Integrated Population Monitoring. Ibis 149(3) 587-596

• Gauthier, G., Besbeas, P., Lebreton, J.-D. and Morgan, B.J.T. (2007) Population growth in Greater Snow Geese: a new modelling approach. Ecology 88 1420-1429

• Hayes, N.V.L., Blackburn, E., Smart, L.V., Boyle, M.M., Russell, G.A., Frost, T.M., Morgan, B.J.T., Baines, A.J. and Gullick, W.J. (2007) Identification and characterization of novel spliced variants of neuregulin 4 in prostate cancer. Clinical Cancer Research 13(11) 3147-3155

• Heide-Jorgensen, M.P., Laidre, K., Borchers, D.L., Samarra, F. and Stern, H. (2007) Increasing abundance of bowhead whales in west Greenland. Biology Letters 3 277-280

• Ibaibarriaga, L., Bernal, M., Motos, L., Uriarte, A., Lonergan, M.E., Borchers, D.L. and Wood, S.N. (2007) Estimation of development properties of stage-classified biological processes using multinomial models: a case study of the Bay of Biscay anchovy (Engraulis encrasicolis, L.) egg development. Canadian Journal of Fisheries and Aquatic Sciences 64 539-553

• Illian, J.B. and Burslem, D.F.R.P. (2007) Contributions of spatial point process modelling to biodiversity theory. Journal de la Société Franςaise de Statistique 148 9-29

• Magle, S.B., McClintock, B.T., Tripp, D.W., White, G.C., Antolin, M.F. and Crooks, K.R. (2007) Mark-resight methodology for estimating population densities for prairie dogs. Journal of Wildlife Management 71 2067-2073
  
  
• Marques, T.A., Thomas, L., Fancy, S.G. and Buckland, S.T. (2007) Improving estimates of bird density using multiple covariate distance sampling. The Auk 124 1229-1243

• Mazzetta, C., Brooks, S.P. and Freeman, S.N. (2007) On smoothing trends in population index modelling. Biometrics 63(4) 1007-1014

• McClintock, B.T. and White, G.C. (2007) Bighorn sheep abundance following a suspected pneumonia epidemic in Rocky Mountain National Park. Journal of Wildlife Management 71 183-189

• Miles, W., Freeman, S.N., Harrison, N.M. and Balmer, D.E. (2007) Measuring passerine productivity using constant effort sites: the effect of missed visits. Ringing & Migration 23(4) 231-237

• Morgan, B.J.T, Palmer, K.J. and Ridout, M.S. (2007) Negative score test statistic. The American Statistician 61 (4) 285-288

• Morgan, B.J.T., Revell, D.J. and Freeman, S.N. (2007) Simplified likelihoods for site occupancy models. Biometrics 63 618-621

• Robinson, R.A., Freeman, S.N., Balmer, D.E. and Grantham, M.J. (2007) Cetti’s Warbler Cettia cetti: analysis of an expanding population. Bird Study 54(2) 230-235

• Southwell, C., Borchers, D.L., Paxton, C.G.M., Burt, M.L. and de la Mare, W. (2007) Estimation of detection probability in aerial surveys of Antarctic pack-ice seals. JABES 12 41-54

• Stephenson, C.M., Kohn, D., Park, K.J., Edwards, C., Atkinson, R. and Travis, J.M.J (2007) Testing mechanistic models of seed dispersal for the invasive Rhododendron ponticum (L.). Perspectives in Plant Ecology, Evolution and Systematics 9(1) 15-28

• Stephenson, C.M., Matthiopoulos, J. and Harwood, J. (2007) Influence of the physical environment and conspecific aggression on the spatial arrangement of breeding grey seals. Ecological Informatics 2 308-317
  

2006

• Besbeas, P. and Freeman, S.N. (2006) Methods for joint inference from panel survey and demographic data.  Ecology 87(5) 1138-1145

• Borchers, D.L., Laake, J.L., Southwell, C. and Paxton, C.G.M. (2006) Accommodating unmodelled heterogeneity in double-observer distance sampling surveys. Biometrics 62 372-378

• Buckland, S.T. (2006) Point transect surveys for songbirds: robust methodologies. The Auk 123 345-357

• Buckland, S.T., Summers, R.W., Borchers, D.L. and Thomas, L. (2006) Point transect sampling with traps or lures. J. App. Ecol. 43 377-384
  
  
• Gimenez, O., Barbraud, C., Crainiceanu, C., Jenouvrier, S. and Morgan, B.J.T. (2006) Semiparametric regression in capture-recapture modelling. Biometrics 62 691-698
  
  
• Hammershoj, M., Travis, J.M.J. and Stephenson, C.M. (2006) Incorporating evolutionary processes into a spatially-explicit model: exploring the consequences of mink-farm closures in Denmark. Ecography 29 465-476

• Harrison, P.J., Buckland, S.T., Thomas, L., Harris, R., Pomeroy, P.P. and Harwood, J. (2006) Incorporating movement into models of grey seal population dynamics. J. Anim. Ecol. 75 634-645
  
  
• Johnson, L.R. and Mangel, M. (2006) Life histories and the evolution of aging in bacteria and other single-celled organisms. Mechanisms of Aging and Development 127(10) 786-793

• King, R., Brooks, S.P., Morgan, B.J.T. and Coulson, T. (2006) Factors influencing Soay sheep survival: a Bayesian analysis. Biometrics 62 211-220
  
  
• Marques, T.A., Andersen, M., Christensen-Dalsgaard, S., Belikov, S., Boltunov, A., Wiig, Ø., Buckland, S.T. and Aars, J. (2006) Comparing distance estimation methods in a helicopter line transect survey. Wildlife Society Bulletin 34 759-763

• McClintock, B.T., White, G.C. and Burnham, K.P. (2006) A robust design mark-resight abundance estimator allowing heterogeneity in resighting probabilities. JABES 11 231-248
  
  
• Moyes, K., Coulson, T., Morgan, B.J.T., Clutton-Brock, T.H., Donald, A. and Morris, S.J. (2006) Cumulative costs of reproduction in female red deer. Okios 115 241-252

• Newman, K.B., Buckland, S.T., Lindley, S.T., Thomas, L. and Fernández, C. (2006) Hidden process models for animal population dynamics. Ecological Applications 16 74-86

• Ridout, M.S., Cole, D.J., Morgan, B.J.T., Byrne, L.J. and Tuite, M.F. (2006) New approximations to the Malthusian parameter. Biometrics 62(4) 1216-1223

• Schneider, M., Law, R. and Illian, J.B. (2006) Quantification of neighbourhood-dependent plant growth by Bayesian hierarchical modelling. Journal of Ecology 94 310-321

• Stephenson, C.M., MacKenzie, M.L., Edwards, C. and Travis, J.M.J. (2006) Modelling establishment probabilities of an exotic plant, Rhododendron ponticum, invading a heterogeneous, woodland landscape using logistic regression with spatial autocorrelation. Ecological Modelling 193(3-4) 747-758

• Wanless, S., Frederiksen, M., Harris, M.P. and Freeman, S.N. (2006) Survival of Northern Gannets Morus bassanus in Britain and Ireland, 1959-2002. Bird Study 53(1) 86-91

• Young, I.M., Illian, J.B., Harris, J.A. and Ritz, K. (2006) Comment on Zhao et al.(2005) "Does ergosterol concentration provide a reliable estimate of soil fungal biomass?". Soil Biology and Biochemistry 38 1500-1501
  
  

Books

• King, R., Morgan, B.J.T., Gimenez, O. and Brooks, S.P. (2009) Bayesian Analysis for Population Ecology. Chapman and Hall/CRC, London

• Illian, J.B., Penttinen, A., Stoyan, D. and Stoyan, H. (2008) Analysis and modelling of spatial point patterns. Wiley, Chichester

• Morgan, B.J.T. (2008) Applied Statistical Modelling (2nd edition). Chapman & Hall/CRC, London